3DU1

The 2.0 Angstrom Resolution Crystal Structure of HetL, a Pentapeptide Repeat Protein involved in Heterocyst Differentiation Regulation from the Cyanobacterium Nostoc sp. Strain PCC 7120


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52950.1M HEPES, 0.7M sodium phosphate monobasic, 0.7M potassium phosphate monobasic, 12.5% glycerol, protein concentration 7.5 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.9257.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.2α = 90
b = 93.763β = 90
c = 101.307γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBRUKER SMART 6000mirrors2008-02-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7768.8489.90.04161.2238.5832008287673
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.771.8758.30.30.34.6338.58

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONsulfur anomalous scatteringTHROUGHOUT228.4120737110197.810.17730.175860.2042RANDOM17.67
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.330.49-0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.097
r_dihedral_angle_3_deg15.472
r_dihedral_angle_4_deg12.169
r_scangle_it4.76
r_dihedral_angle_1_deg4.654
r_scbond_it3.083
r_mcangle_it1.511
r_angle_refined_deg1.344
r_mcbond_it0.965
r_symmetry_vdw_refined0.517
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.097
r_dihedral_angle_3_deg15.472
r_dihedral_angle_4_deg12.169
r_scangle_it4.76
r_dihedral_angle_1_deg4.654
r_scbond_it3.083
r_mcangle_it1.511
r_angle_refined_deg1.344
r_mcbond_it0.965
r_symmetry_vdw_refined0.517
r_nbtor_refined0.308
r_nbd_refined0.219
r_xyhbond_nbd_refined0.146
r_symmetry_hbond_refined0.133
r_chiral_restr0.096
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1798
Nucleic Acid Atoms
Solvent Atoms238
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PROTEUM PLUSdata collection
SAINTdata reduction
SADABSdata scaling
SHELXSphasing