☰ Navigation Tabs
Crystal structure of the complex of the Caf1M chaperone with the mini-fiber of two Caf1 subunits (Caf1:Caf1), carrying the Thr7Phe and Ala9Val mutations in the Gd donor strand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z9S PDB entry 1Z9S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.9 295 16-17% PEG 8000 in 0.1 M Na cacodylate and 0.2 M Ca acetate, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.37 48.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.234 α = 90 b = 91.181 β = 90 c = 166.024 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm Bent germanium crystal 2006-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 1.00 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 92.1 0.087 13.6 3.5 45057 2 2 24.13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 90.2 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1Z9S 2.4 31.64 2 39785 37777 2008 91.12 0.217 0.21653 0.21402 0.213 0.26434 0.2624 RANDOM 24.133
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 1.56 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.473 r_dihedral_angle_4_deg 20.571 r_dihedral_angle_3_deg 17.502 r_dihedral_angle_1_deg 7.139 r_scangle_it 3.985 r_scbond_it 2.504 r_mcangle_it 1.678 r_angle_refined_deg 1.542 r_mcbond_it 1.084 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.473 r_dihedral_angle_4_deg 20.571 r_dihedral_angle_3_deg 17.502 r_dihedral_angle_1_deg 7.139 r_scangle_it 3.985 r_scbond_it 2.504 r_mcangle_it 1.678 r_angle_refined_deg 1.542 r_mcbond_it 1.084 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.209 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7181 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection MOSFLM data reduction SCALA data scaling MOLREP phasing