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The crystal structure of the fibrinogen binding protein from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 10% PEG4000, 45% tacsimate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.25 62.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.269 α = 90 b = 102.269 β = 90 c = 166.911 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.81 87.04 98.87 0.145 21.84 16.9 10661 10541 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.81 2.88 88.09 0.639 1.7 9.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.81 87.04 10661 10541 530 98.87 0.1908 0.1872 0.2197 0.27048 0.2666 RANDOM 48.353
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.32 1.32 -2.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.024 r_dihedral_angle_3_deg 20.897 r_dihedral_angle_4_deg 20.24 r_dihedral_angle_1_deg 9.482 r_scangle_it 3.452 r_scbond_it 2.286 r_angle_refined_deg 2.282 r_mcangle_it 1.415 r_angle_other_deg 1.151 r_mcbond_it 1.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.024 r_dihedral_angle_3_deg 20.897 r_dihedral_angle_4_deg 20.24 r_dihedral_angle_1_deg 9.482 r_scangle_it 3.452 r_scbond_it 2.286 r_angle_refined_deg 2.282 r_mcangle_it 1.415 r_angle_other_deg 1.151 r_mcbond_it 1.112 r_symmetry_hbond_refined 0.456 r_nbd_refined 0.264 r_nbd_other 0.223 r_nbtor_refined 0.202 r_xyhbond_nbd_refined 0.189 r_symmetry_vdw_other 0.186 r_mcbond_other 0.163 r_symmetry_vdw_refined 0.141 r_chiral_restr 0.127 r_nbtor_other 0.103 r_xyhbond_nbd_other 0.041 r_bond_refined_d 0.026 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2165 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling MLPHARE phasing