3DO8 | pdb_00003do8

The crystal structure of the protein with unknown function from Archaeoglobus fulgidus

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	289	0.1 M Hepes, pH7.5, 30%PEG MME, VAPOR DIFFUSION, SITTING DROP, temperature 289K

Crystal Properties
Matthews coefficient	Solvent content
2.12	42.08

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 49.001	α = 90
b = 63.781	β = 102.3
c = 47.047	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315	mirrors	2008-04-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-BM	0.9794	APS	19-BM

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.6	47.89	96.23	0.059	25.78	4.6	35569	34228	2	2	19

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.6	1.642	86.87		0.331	2.25	3.7	2757

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	1.6	47.89	35569	34228	1789	96.23	0.16909	0.16678	0.18	0.21372	0.22	RANDOM	18.06

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.12		-0.51	-0.18		1.09

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.017
r_dihedral_angle_4_deg	15.04
r_dihedral_angle_3_deg	13.423
r_dihedral_angle_1_deg	7.321
r_scangle_it	5.055
r_scbond_it	3.767
r_mcangle_it	2.217
r_mcbond_it	1.917
r_angle_refined_deg	1.574
r_angle_other_deg	0.988
r_mcbond_other	0.821
r_symmetry_vdw_other	0.273
r_symmetry_vdw_refined	0.244
r_nbd_refined	0.234
r_nbd_other	0.203
r_symmetry_hbond_refined	0.191
r_nbtor_refined	0.179
r_xyhbond_nbd_refined	0.168
r_chiral_restr	0.093
r_nbtor_other	0.08
r_bond_refined_d	0.015
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2092
Nucleic Acid Atoms
Solvent Atoms	216
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing