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CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION FROM DUF427 FAMILY (RSPH17029_0682) FROM RHODOBACTER SPHAEROIDES 2.4.1 AT 2.51 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 20.0% polyethylene glycol 3350, 0.2M sodium formate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.06 59.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.403 α = 90 b = 93.087 β = 90 c = 128.016 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-03-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162,0.97929,0.97915 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.51 28.831 99.6 0.073 0.073 8.3 3.6 27752 66.104
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.51 2.58 99.2 0.681 0.681 1.1 3.6 2017
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.51 28.831 27700 1396 99.5 0.213 0.212 0.2147 0.228 0.2346 RANDOM 48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.68 -3.75 -0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.585 r_dihedral_angle_4_deg 21.174 r_dihedral_angle_3_deg 14.806 r_dihedral_angle_1_deg 5.6 r_scangle_it 5.184 r_scbond_it 4.031 r_mcangle_it 2.381 r_mcbond_it 1.524 r_angle_refined_deg 1.492 r_angle_other_deg 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.585 r_dihedral_angle_4_deg 21.174 r_dihedral_angle_3_deg 14.806 r_dihedral_angle_1_deg 5.6 r_scangle_it 5.184 r_scbond_it 4.031 r_mcangle_it 2.381 r_mcbond_it 1.524 r_angle_refined_deg 1.492 r_angle_other_deg 0.901 r_mcbond_other 0.243 r_symmetry_vdw_other 0.237 r_nbd_refined 0.2 r_nbd_other 0.2 r_symmetry_hbond_refined 0.189 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.156 r_symmetry_vdw_refined 0.127 r_nbtor_other 0.085 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4290 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing