3DFI

The crystal structure of antimicrobial reagent A40926 pseudoaglycone deacetylase Dbv21

X-RAY DIFFRACTION

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Crystallization

Crystal Properties
Matthews coefficient	Solvent content
2.65	53.66

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 62.94	α = 90
b = 62.94	β = 90
c = 159.89	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray						M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 21-ID-D		APS	21-ID-D

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.1	25					18476

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.1	25	18476	992	100	0.21183	0.20973	0.2518	RANDOM	52.423

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.58			-1.58		3.17

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.485
r_dihedral_angle_4_deg	17.588
r_dihedral_angle_3_deg	16.167
r_dihedral_angle_1_deg	6.068
r_scangle_it	2.416
r_scbond_it	1.662
r_angle_refined_deg	1.384
r_mcangle_it	1.2
r_mcbond_it	0.699
r_nbtor_refined	0.299
r_metal_ion_refined	0.273
r_symmetry_vdw_refined	0.246
r_nbd_refined	0.212
r_symmetry_hbond_refined	0.166
r_xyhbond_nbd_refined	0.145
r_chiral_restr	0.099
r_bond_refined_d	0.014
r_gen_planes_refined	0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1864
Nucleic Acid Atoms
Solvent Atoms	94
Heterogen Atoms	1

Software

Software
Software Name	Purpose
REFMAC	refinement