3D8B

Crystal structure of human fidgetin-like protein 1 in complex with ADP


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.527725% PEG 3350, 0.2M NaCl, 0.1M Bis-Tris, 0.02M ADP, 0.01M MgCl2, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2846.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.43α = 90
b = 85.43β = 90
c = 197.58γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152008-04-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-11.0000ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
122599.30.0750.075207.84996849968
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.199.60.5560.5565.27.96683

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3B9P224.99474664746624991000.199090.199090.197130.23669RANDOM24.025
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.22-0.220.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.886
r_dihedral_angle_3_deg15.188
r_dihedral_angle_4_deg14.581
r_dihedral_angle_1_deg5.74
r_scangle_it3.524
r_scbond_it2.171
r_mcangle_it1.492
r_angle_refined_deg1.421
r_mcbond_it0.951
r_angle_other_deg0.943
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.886
r_dihedral_angle_3_deg15.188
r_dihedral_angle_4_deg14.581
r_dihedral_angle_1_deg5.74
r_scangle_it3.524
r_scbond_it2.171
r_mcangle_it1.492
r_angle_refined_deg1.421
r_mcbond_it0.951
r_angle_other_deg0.943
r_symmetry_vdw_other0.255
r_nbd_refined0.211
r_nbd_other0.197
r_mcbond_other0.191
r_nbtor_refined0.174
r_symmetry_hbond_refined0.159
r_xyhbond_nbd_refined0.142
r_symmetry_vdw_refined0.12
r_chiral_restr0.085
r_nbtor_other0.084
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4314
Nucleic Acid Atoms
Solvent Atoms283
Heterogen Atoms54

Software

Software
Software NamePurpose
REFMACrefinement
MxCuBEdata collection
XDSdata reduction
XSCALEdata scaling
MOLREPphasing