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Crystal structure of the effector domain of the putative transcriptional regulator IclR from Acinetobacter sp. ADP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 289 1.26M Ammonium sulfate, 0.1M CHES pH 9.5, 0.2M NaCl, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.54 51.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.382 α = 90 b = 71.681 β = 90 c = 96.222 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2008-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97931 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 35.84 99 0.102 10 9.2 15652 15652 53.69
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.5 98.9 0.85 2.3 9 778
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.46 35.84 14818 14818 780 99.17 0.198 0.198 0.195 0.1934 0.269 0.2668 RANDOM 64.159
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.16 0.24 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.16 r_dihedral_angle_4_deg 21.127 r_dihedral_angle_3_deg 20.048 r_dihedral_angle_1_deg 6.521 r_scangle_it 3.462 r_scbond_it 2.386 r_angle_refined_deg 1.656 r_mcangle_it 1.599 r_mcbond_it 0.986 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.16 r_dihedral_angle_4_deg 21.127 r_dihedral_angle_3_deg 20.048 r_dihedral_angle_1_deg 6.521 r_scangle_it 3.462 r_scbond_it 2.386 r_angle_refined_deg 1.656 r_mcangle_it 1.599 r_mcbond_it 0.986 r_nbtor_refined 0.307 r_nbd_refined 0.247 r_symmetry_vdw_refined 0.215 r_xyhbond_nbd_refined 0.195 r_symmetry_hbond_refined 0.154 r_chiral_restr 0.112 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2744 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing SOLVE phasing RESOLVE phasing