☰ Navigation Tabs
The crystal structure of the tail protein from Neisseria meningitidis MC58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.2M Potassium iodide, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.57 52.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.46 α = 90 b = 137.46 β = 90 c = 137.46 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2006-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 97.13 99.75 0.113 38.89 28.5 48038 47918 2 33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.155 99.57 0.57 2.39 20.5 3705
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 97.13 47918 47918 2563 99.75 0.22219 0.22219 0.21952 0.2219 0.27346 0.2671 RANDOM 33.105
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.442 r_dihedral_angle_4_deg 23.422 r_dihedral_angle_3_deg 17.166 r_dihedral_angle_1_deg 8.39 r_scangle_it 3.991 r_scbond_it 2.738 r_angle_refined_deg 1.817 r_mcangle_it 1.782 r_mcbond_it 1.532 r_angle_other_deg 1.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.442 r_dihedral_angle_4_deg 23.422 r_dihedral_angle_3_deg 17.166 r_dihedral_angle_1_deg 8.39 r_scangle_it 3.991 r_scbond_it 2.738 r_angle_refined_deg 1.817 r_mcangle_it 1.782 r_mcbond_it 1.532 r_angle_other_deg 1.058 r_symmetry_hbond_refined 0.307 r_symmetry_vdw_other 0.275 r_mcbond_other 0.26 r_xyhbond_nbd_refined 0.24 r_nbd_refined 0.233 r_nbd_other 0.218 r_symmetry_vdw_refined 0.179 r_nbtor_refined 0.176 r_chiral_restr 0.171 r_nbtor_other 0.094 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5029 Nucleic Acid Atoms Solvent Atoms 363 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing