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Crystal structure of a duf3244 family protein with an immunoglobulin-like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc 8482 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.9 277 0.2000M MgFormate, 20.0000% PEG-3350, No Buffer pH 5.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.42 49.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.562 α = 90 b = 55.179 β = 94.31 c = 47.116 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 28.677 99.6 0.098 0.098 4.6 7.4 25116 24.306
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 95.7 0.871 0.871 0.9 7 1763
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 28.677 25099 1283 99.63 0.176 0.174 0.1785 0.22 0.2242 RANDOM 18.342
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.05 0.32 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.188 r_dihedral_angle_4_deg 16.805 r_dihedral_angle_3_deg 12.758 r_dihedral_angle_1_deg 6.224 r_scangle_it 5.982 r_scbond_it 4.374 r_mcangle_it 2.717 r_mcbond_it 1.914 r_angle_refined_deg 1.494 r_angle_other_deg 0.845
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.188 r_dihedral_angle_4_deg 16.805 r_dihedral_angle_3_deg 12.758 r_dihedral_angle_1_deg 6.224 r_scangle_it 5.982 r_scbond_it 4.374 r_mcangle_it 2.717 r_mcbond_it 1.914 r_angle_refined_deg 1.494 r_angle_other_deg 0.845 r_mcbond_other 0.552 r_nbd_other 0.21 r_nbd_refined 0.193 r_symmetry_vdw_other 0.18 r_nbtor_refined 0.175 r_symmetry_hbond_refined 0.171 r_symmetry_vdw_refined 0.134 r_xyhbond_nbd_refined 0.116 r_nbtor_other 0.089 r_chiral_restr 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1439 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction