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Integrated structural and functional model of the human ESCRT-II complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 300 5% PEG4000, 15% Glycerol, 100mM Na-Acetate, pH4.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 3.04 59.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.162 α = 90 b = 89.153 β = 101.52 c = 91.437 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD MARMOSAIC 300 mm CCD mirrors 2007-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 91.4 0.049 33.1 3.2 31993 30680 3 3 38.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 61.1 0.302 3.13 2.5 2343
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.61 44.8 30665 29133 1532 90.95 0.24074 0.23773 0.2257 0.29804 0.2824 RANDOM 74.494
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.46 -3.45 3.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.252 r_dihedral_angle_3_deg 21.387 r_dihedral_angle_4_deg 19.285 r_dihedral_angle_1_deg 6.06 r_scangle_it 2.991 r_scbond_it 1.835 r_angle_refined_deg 1.635 r_mcangle_it 1.316 r_mcbond_it 0.766 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.252 r_dihedral_angle_3_deg 21.387 r_dihedral_angle_4_deg 19.285 r_dihedral_angle_1_deg 6.06 r_scangle_it 2.991 r_scbond_it 1.835 r_angle_refined_deg 1.635 r_mcangle_it 1.316 r_mcbond_it 0.766 r_nbtor_refined 0.317 r_nbd_refined 0.251 r_symmetry_vdw_refined 0.217 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.111 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5592 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing