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Crystal structure of Reverb beta in complex with heme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.6 297 1.6 M Ammonium sulfate, 0.1 M Na Hepes pH 7.6, 4% Jeffamine M-600, VAPOR DIFFUSION, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.69 54.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.428 α = 90 b = 48.623 β = 90 c = 68.954 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.6 0.09 0.09 11.1 9.3 20061 20061 22.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.93 100 0.453 0.453 5.46 9.4 986
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 40.56 19007 19007 1020 99.57 0.19899 0.19899 0.19704 0.23541 0.228 RANDOM 25.471
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.3 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.759 r_dihedral_angle_3_deg 13.663 r_dihedral_angle_4_deg 11.069 r_scangle_it 5.029 r_dihedral_angle_1_deg 4.73 r_scbond_it 3.337 r_mcangle_it 1.84 r_mcbond_it 1.596 r_angle_refined_deg 1.426 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.759 r_dihedral_angle_3_deg 13.663 r_dihedral_angle_4_deg 11.069 r_scangle_it 5.029 r_dihedral_angle_1_deg 4.73 r_scbond_it 3.337 r_mcangle_it 1.84 r_mcbond_it 1.596 r_angle_refined_deg 1.426 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.253 r_symmetry_vdw_refined 0.22 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1571 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling SOLVE phasing