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N53I V55L MUTANT of FYN SH3 DOMAIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FYN PDB entry 1fyn
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.1 M Sodium Cacodylate, 1.4 M Sodium Acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.88 34.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.032 α = 90 b = 52.032 β = 90 c = 44.817 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV mirrors 2007-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 45.06 93.7 0.0728 0.0175 53.07 3.4 9568 8962 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.7 97.8 0.1178 0.031 33.05 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1fyn 1.6 45.06 9568 8516 435 93.69 0.20881 0.20743 0.23652 0.2749 RANDOM 15.398
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.11 -0.22 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.66 r_dihedral_angle_4_deg 25.935 r_dihedral_angle_3_deg 12.883 r_dihedral_angle_1_deg 6.042 r_scangle_it 1.896 r_scbond_it 1.305 r_angle_refined_deg 0.971 r_mcangle_it 0.971 r_mcbond_it 0.554 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.66 r_dihedral_angle_4_deg 25.935 r_dihedral_angle_3_deg 12.883 r_dihedral_angle_1_deg 6.042 r_scangle_it 1.896 r_scbond_it 1.305 r_angle_refined_deg 0.971 r_mcangle_it 0.971 r_mcbond_it 0.554 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.202 r_nbd_refined 0.179 r_symmetry_hbond_refined 0.095 r_xyhbond_nbd_refined 0.088 r_chiral_restr 0.074 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 496 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection XDS data reduction XDS data scaling COMO phasing