☰ Navigation Tabs
The crystal structure of OspA deletion mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB entry 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.45 293 24% PEG3350, 0.1M Imidazole, 0.2M MgCl2, 16mg/ml, 30% Glycerol for cryo, pH 6.45, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.66 53.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.813 α = 90 b = 117.176 β = 90 c = 36.761 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97105 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.3 0.104 18.6 5.9 24821
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 98.2 0.562 3.76 5 2404
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2G8C 1.8 20 23507 1264 99.2 0.19071 0.18882 0.22604 0.24 RANDOM 19.966
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.8 -2.29 -1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.661 r_dihedral_angle_3_deg 12.932 r_dihedral_angle_4_deg 12.657 r_dihedral_angle_1_deg 5.456 r_scangle_it 4.488 r_scbond_it 3.04 r_mcangle_it 1.611 r_angle_refined_deg 1.497 r_mcbond_it 1.381 r_angle_other_deg 0.788
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.661 r_dihedral_angle_3_deg 12.932 r_dihedral_angle_4_deg 12.657 r_dihedral_angle_1_deg 5.456 r_scangle_it 4.488 r_scbond_it 3.04 r_mcangle_it 1.611 r_angle_refined_deg 1.497 r_mcbond_it 1.381 r_angle_other_deg 0.788 r_symmetry_vdw_refined 0.273 r_mcbond_other 0.254 r_symmetry_vdw_other 0.247 r_nbd_refined 0.197 r_nbd_other 0.185 r_symmetry_hbond_refined 0.177 r_nbtor_refined 0.16 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.097 r_nbtor_other 0.082 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1730 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing