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Crystal structure of the C-terminal domain of the Shigella type III effector IpaH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 2M Ammonium sulfate, 1% PEG MME 2000, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.75 55.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.928 α = 90 b = 128.928 β = 90 c = 282.825 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2006-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97845 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 50 99 0.073 35.3 8.2 35079 34738 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.74 99.5 0.479 3.8 8.1 3447
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.65 49.21 34706 34706 1743 98.95 0.2309 0.2309 0.2281 0.28382 0.3009 RANDOM 61.151
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.383 r_dihedral_angle_3_deg 20.686 r_dihedral_angle_4_deg 20.375 r_dihedral_angle_1_deg 5.951 r_scangle_it 4.146 r_scbond_it 2.636 r_angle_refined_deg 1.586 r_mcangle_it 1.527 r_mcbond_it 0.901 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.383 r_dihedral_angle_3_deg 20.686 r_dihedral_angle_4_deg 20.375 r_dihedral_angle_1_deg 5.951 r_scangle_it 4.146 r_scbond_it 2.636 r_angle_refined_deg 1.586 r_mcangle_it 1.527 r_mcbond_it 0.901 r_nbtor_refined 0.314 r_nbd_refined 0.249 r_symmetry_vdw_refined 0.196 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.117 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6268 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement EPICS-based data collection data data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing