☰ Navigation Tabs
Crystal structure of putative beta-lactamase (NP_815223.1) from Enterococcus faecalis V583 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.3 277 NANODROP, 0.2M NH4NO3, 20.0% PEG 3350, No Buffer pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.31 46.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.975 α = 90 b = 64.975 β = 90 c = 140.905 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing 2008-02-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.918381, 0.979051, 0.978489 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29.501 99.4 0.082 0.082 6.1 7.7 48842 14.909
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 98.7 0.544 0.544 1.4 7.6 3507
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.501 48792 2470 99.17 0.149 0.147 0.1436 0.172 0.1666 RANDOM 11.791
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.05 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.999 r_dihedral_angle_4_deg 19.272 r_dihedral_angle_3_deg 11.13 r_dihedral_angle_1_deg 5.825 r_scangle_it 5.036 r_scbond_it 3.289 r_mcangle_it 2.192 r_angle_refined_deg 1.477 r_angle_other_deg 1.416 r_mcbond_it 1.414
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.999 r_dihedral_angle_4_deg 19.272 r_dihedral_angle_3_deg 11.13 r_dihedral_angle_1_deg 5.825 r_scangle_it 5.036 r_scbond_it 3.289 r_mcangle_it 2.192 r_angle_refined_deg 1.477 r_angle_other_deg 1.416 r_mcbond_it 1.414 r_mcbond_other 0.4 r_chiral_restr 0.09 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2012 Nucleic Acid Atoms Solvent Atoms 352 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing