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Crystal structure of an osmc-like hydroperoxide resistance protein (jann_2040) from jannaschia sp. ccs1 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.57 293 NANODROP, 1.545M Ammonium dihydrogen phosphate, 0.1M Tris-HCl pH 8.57, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.71 66.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.886 α = 90 b = 81.886 β = 90 c = 70.633 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing 2008-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.978835 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 26.803 100 0.097 0.097 5.3 10.4 30482 19.728
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 100 0.812 0.812 0.9 7.6 2149
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 26.803 30438 1538 99.96 0.145 0.144 0.1519 0.164 0.1735 RANDOM 17.065
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 0.25 0.5 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.518 r_dihedral_angle_3_deg 12.489 r_dihedral_angle_4_deg 9.965 r_scangle_it 8.068 r_dihedral_angle_1_deg 6.039 r_scbond_it 5.832 r_mcangle_it 3.236 r_mcbond_it 2.658 r_angle_refined_deg 1.59 r_angle_other_deg 0.932
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.518 r_dihedral_angle_3_deg 12.489 r_dihedral_angle_4_deg 9.965 r_scangle_it 8.068 r_dihedral_angle_1_deg 6.039 r_scbond_it 5.832 r_mcangle_it 3.236 r_mcbond_it 2.658 r_angle_refined_deg 1.59 r_angle_other_deg 0.932 r_mcbond_other 0.518 r_nbd_refined 0.264 r_symmetry_vdw_other 0.235 r_xyhbond_nbd_refined 0.232 r_nbd_other 0.206 r_symmetry_vdw_refined 0.193 r_symmetry_hbond_refined 0.186 r_nbtor_refined 0.173 r_nbtor_other 0.086 r_chiral_restr 0.085 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1145 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing