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Thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 protein 15-20 mg/ml, Ligand (saturated),PEG 4000, MgCl2 0.2M, Tris-HCL pH8 0.1M, 7-10 days, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.041 α = 90 b = 173.178 β = 118.76 c = 75.962 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2003-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.0000 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.39 50 60.8 0.062 12.4 1.7 39761
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 45.2 0.166 1.6 2953
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.39 50 39725 2011 60.84 0.201 0.198 0.1988 0.273 0.2686 RANDOM 38.855
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.24 -1.19 -2.63 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.521 r_scangle_it 1.171 r_angle_refined_deg 1.006 r_angle_other_deg 0.736 r_scbond_it 0.652 r_mcangle_it 0.567 r_mcbond_it 0.304 r_nbd_other 0.197 r_symmetry_hbond_refined 0.168 r_symmetry_vdw_other 0.166
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.521 r_scangle_it 1.171 r_angle_refined_deg 1.006 r_angle_other_deg 0.736 r_scbond_it 0.652 r_mcangle_it 0.567 r_mcbond_it 0.304 r_nbd_other 0.197 r_symmetry_hbond_refined 0.168 r_symmetry_vdw_other 0.166 r_nbd_refined 0.164 r_xyhbond_nbd_refined 0.155 r_symmetry_vdw_refined 0.129 r_nbtor_other 0.08 r_chiral_restr 0.056 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12552 Nucleic Acid Atoms Solvent Atoms 446 Heterogen Atoms 172
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction