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Thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 protein 15-20 mg/ml, Ligand (saturated),PEG 4000, MgCl2 0.2M, Tris-HCL pH8 0.1M, 7-10 days, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.25 45.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.681 α = 90 b = 173.957 β = 119.06 c = 76.399 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2003-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.0000 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 97.9 0.06 10.4 4.4 64140
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 86.9 0.252 3.8 5669
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 50 64058 3290 97.78 0.192 0.19 0.1924 0.238 0.2354 RANDOM 34.367
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.4 1.36 -1.99 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.564 r_scangle_it 1.852 r_angle_refined_deg 1.083 r_scbond_it 1.03 r_angle_other_deg 0.755 r_mcangle_it 0.734 r_mcbond_it 0.383 r_nbd_other 0.211 r_symmetry_vdw_other 0.187 r_nbd_refined 0.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.564 r_scangle_it 1.852 r_angle_refined_deg 1.083 r_scbond_it 1.03 r_angle_other_deg 0.755 r_mcangle_it 0.734 r_mcbond_it 0.383 r_nbd_other 0.211 r_symmetry_vdw_other 0.187 r_nbd_refined 0.177 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.144 r_symmetry_vdw_refined 0.114 r_nbtor_other 0.08 r_chiral_restr 0.061 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12282 Nucleic Acid Atoms Solvent Atoms 645 Heterogen Atoms 148
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction