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Thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 protein 15-20 mg/ml, Ligand (saturated),PEG 4000, MgCl2 0.2M, Tris-HCL pH8 0.1M, 7-10 days, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.44 49.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.862 α = 90 b = 135.655 β = 97.16 c = 83.148 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 93.6 0.041 26.4 3.7 187138
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 66.9 0.116 3.1 13330
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 50 187015 3756 93.56 0.233 0.232 0.2372 0.257 RANDOM 25.234
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.85 0.26 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.391 r_angle_other_deg 1.155 r_scangle_it 0.89 r_angle_refined_deg 0.86 r_scbond_it 0.492 r_mcangle_it 0.433 r_mcbond_it 0.23 r_nbd_other 0.181 r_nbd_refined 0.149 r_symmetry_vdw_other 0.138
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.391 r_angle_other_deg 1.155 r_scangle_it 0.89 r_angle_refined_deg 0.86 r_scbond_it 0.492 r_mcangle_it 0.433 r_mcbond_it 0.23 r_nbd_other 0.181 r_nbd_refined 0.149 r_symmetry_vdw_other 0.138 r_symmetry_vdw_refined 0.088 r_nbtor_other 0.076 r_xyhbond_nbd_refined 0.071 r_chiral_restr 0.049 r_symmetry_hbond_refined 0.019 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12061 Nucleic Acid Atoms Solvent Atoms 1236 Heterogen Atoms 172
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction