3CCH

H-2Db complex with murine gp100


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP92771.8M Ammonium Sulfate, 0.1M Tris, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.1160.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.5α = 90
b = 176.6β = 120
c = 85.5γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298CCDADSC QUANTUM 2102007-03-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.934ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.619.696.4675786517111
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.789.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.619.616757863514337999.690.24560.242660.240790.27859RANDOM59.524
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.474
r_dihedral_angle_4_deg22.123
r_dihedral_angle_3_deg19.994
r_dihedral_angle_1_deg6.65
r_mcangle_it2.058
r_angle_refined_deg1.475
r_scangle_it1.407
r_mcbond_it1.196
r_scbond_it0.895
r_symmetry_hbond_refined0.436
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.474
r_dihedral_angle_4_deg22.123
r_dihedral_angle_3_deg19.994
r_dihedral_angle_1_deg6.65
r_mcangle_it2.058
r_angle_refined_deg1.475
r_scangle_it1.407
r_mcbond_it1.196
r_scbond_it0.895
r_symmetry_hbond_refined0.436
r_nbtor_refined0.333
r_nbd_refined0.272
r_symmetry_vdw_refined0.269
r_xyhbond_nbd_refined0.22
r_chiral_restr0.097
r_bond_refined_d0.013
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12590
Nucleic Acid Atoms
Solvent Atoms82
Heterogen Atoms129

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
XDSdata reduction
XSCALEdata scaling
PHASERphasing