3C6P

Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION627712-14% PEG 40,000, 100mM BTP pH6.0, 200mM NaCl, EVAPORATION, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.9558.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.794α = 90
b = 80.386β = 104.72
c = 125.206γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11neutron100CCDADSC QUANTUM 3152007-07-21LLAUE
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.0000ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75075495502475322
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.795

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1P1M2.749.714955024753132447.780.184540.180480.26075RANDOM46.101
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.990.072.64-3.59
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.156
r_dihedral_angle_3_deg21.075
r_dihedral_angle_4_deg17.014
r_dihedral_angle_1_deg7.763
r_scangle_it4.575
r_scbond_it2.842
r_angle_refined_deg2.479
r_mcangle_it1.671
r_mcbond_it0.983
r_symmetry_vdw_refined0.334
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.156
r_dihedral_angle_3_deg21.075
r_dihedral_angle_4_deg17.014
r_dihedral_angle_1_deg7.763
r_scangle_it4.575
r_scbond_it2.842
r_angle_refined_deg2.479
r_mcangle_it1.671
r_mcbond_it0.983
r_symmetry_vdw_refined0.334
r_nbtor_refined0.333
r_nbd_refined0.281
r_xyhbond_nbd_refined0.234
r_chiral_restr0.16
r_bond_refined_d0.025
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5182
Nucleic Acid Atoms
Solvent Atoms301
Heterogen Atoms52

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing