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Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P1M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6 277 12-14% PEG 40,000, 100mM BTP pH6.0, 200mM NaCl, EVAPORATION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 5.9 79.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.794 α = 90 b = 80.386 β = 104.72 c = 125.206 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 75 49550 24753 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1P1M 2.7 49.71 49550 24753 1324 47.78 0.18454 0.18048 0.2019 0.26075 0.2777 RANDOM 46.101
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 0.07 2.64 -3.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.156 r_dihedral_angle_3_deg 21.075 r_dihedral_angle_4_deg 17.014 r_dihedral_angle_1_deg 7.763 r_scangle_it 4.575 r_scbond_it 2.842 r_angle_refined_deg 2.479 r_mcangle_it 1.671 r_mcbond_it 0.983 r_symmetry_vdw_refined 0.334
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.156 r_dihedral_angle_3_deg 21.075 r_dihedral_angle_4_deg 17.014 r_dihedral_angle_1_deg 7.763 r_scangle_it 4.575 r_scbond_it 2.842 r_angle_refined_deg 2.479 r_mcangle_it 1.671 r_mcbond_it 0.983 r_symmetry_vdw_refined 0.334 r_nbtor_refined 0.333 r_nbd_refined 0.281 r_xyhbond_nbd_refined 0.234 r_chiral_restr 0.16 r_bond_refined_d 0.025 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5182 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling PHASER phasing