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Crystal structure of an uncharacterized protein from Actinobacillus succinogenes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 0.2 M Magnesium chloride, 0.1 M Bis-tris, 25% PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.94 36.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.888 α = 90 b = 67.602 β = 90 c = 204.802 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2008-01-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97900 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 50 86.4 0.088 8.4 3 55962
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.06 38.4 0.245 1.8 2517
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.99 30.47 31315 1596 100 0.183 0.18 0.231 0.2312 RANDOM 19.901
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.03 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.785 r_dihedral_angle_4_deg 17.973 r_dihedral_angle_3_deg 16.446 r_dihedral_angle_1_deg 6.395 r_scangle_it 4.661 r_scbond_it 3.251 r_angle_refined_deg 1.994 r_mcangle_it 1.886 r_mcbond_it 1.208 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.785 r_dihedral_angle_4_deg 17.973 r_dihedral_angle_3_deg 16.446 r_dihedral_angle_1_deg 6.395 r_scangle_it 4.661 r_scbond_it 3.251 r_angle_refined_deg 1.994 r_mcangle_it 1.886 r_mcbond_it 1.208 r_nbtor_refined 0.318 r_symmetry_vdw_refined 0.27 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.177 r_symmetry_hbond_refined 0.157 r_chiral_restr 0.156 r_bond_refined_d 0.022 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4120 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 13
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction CBASS data collection PHENIX phasing