X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6298100 mM Hepes, 0.6 M Na/K Tartrate, 20 mM Glycine and 5mM DTT, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
4.1970.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 203.5α = 90
b = 95.048β = 124.71
c = 149.39γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200CCDADSC QUANTUM 3152006-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.9796ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.65097.50.06510.537042521
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.6991.40.4372.46527

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.649.577254770332357397.410.24660.2470.2450.286RANDOM60.547
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.730.120.341.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.892
r_dihedral_angle_3_deg17.85
r_dihedral_angle_4_deg16.827
r_dihedral_angle_1_deg5.003
r_scangle_it2.964
r_scbond_it1.843
r_mcangle_it1.655
r_angle_refined_deg1.14
r_mcbond_it0.907
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.892
r_dihedral_angle_3_deg17.85
r_dihedral_angle_4_deg16.827
r_dihedral_angle_1_deg5.003
r_scangle_it2.964
r_scbond_it1.843
r_mcangle_it1.655
r_angle_refined_deg1.14
r_mcbond_it0.907
r_nbtor_refined0.306
r_nbd_refined0.206
r_symmetry_vdw_refined0.156
r_xyhbond_nbd_refined0.141
r_symmetry_hbond_refined0.14
r_chiral_restr0.088
r_bond_refined_d0.008
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9770
Nucleic Acid Atoms
Solvent Atoms39
Heterogen Atoms37

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection