3BZV

Crystal structural of the mutated T264A EscU C-terminal domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH5.5293Li2SO4, Bis-Tris, Peg3350, NaCl, pH 5.5, Microbatch, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9737.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.086α = 90
b = 52.086β = 90
c = 155.184γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.11.0000ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.945099.60.06610.5139981994122
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.942.0197.40.72511.4929

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.9445.139981988647499.810.2170.2170.2150.268RANDOM46.088
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.45-0.22-0.450.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.892
r_dihedral_angle_4_deg29.276
r_dihedral_angle_3_deg19.636
r_dihedral_angle_1_deg14.195
r_scangle_it3.62
r_scbond_it2.743
r_angle_refined_deg2.108
r_mcangle_it2.006
r_mcbond_it1.628
r_angle_other_deg1.153
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.892
r_dihedral_angle_4_deg29.276
r_dihedral_angle_3_deg19.636
r_dihedral_angle_1_deg14.195
r_scangle_it3.62
r_scbond_it2.743
r_angle_refined_deg2.108
r_mcangle_it2.006
r_mcbond_it1.628
r_angle_other_deg1.153
r_mcbond_other0.355
r_symmetry_hbond_refined0.256
r_nbd_refined0.245
r_xyhbond_nbd_refined0.222
r_symmetry_vdw_other0.21
r_nbd_other0.197
r_nbtor_refined0.185
r_chiral_restr0.158
r_symmetry_vdw_refined0.111
r_nbtor_other0.098
r_bond_refined_d0.023
r_gen_planes_refined0.009
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms825
Nucleic Acid Atoms
Solvent Atoms31
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing