X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.9293NaCl 130 mM, 35% PEG 3350, 100 mM Hepes pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.8356.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 174.943α = 90
b = 174.943β = 90
c = 290.167γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2006-03-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.9330ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.975.811000.1530.1534.114.358753
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.93.061000.4250.4251.714.28428

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.975.8158667296799.990.2920.2880.366RANDOM22.069
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.410.210.41-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.891
r_dihedral_angle_4_deg20.845
r_dihedral_angle_3_deg20.184
r_dihedral_angle_1_deg7.128
r_angle_refined_deg2.331
r_mcangle_it2.08
r_angle_other_deg1.44
r_scangle_it1.315
r_mcbond_it1.234
r_scbond_it0.823
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.891
r_dihedral_angle_4_deg20.845
r_dihedral_angle_3_deg20.184
r_dihedral_angle_1_deg7.128
r_angle_refined_deg2.331
r_mcangle_it2.08
r_angle_other_deg1.44
r_scangle_it1.315
r_mcbond_it1.234
r_scbond_it0.823
r_symmetry_vdw_refined0.262
r_nbd_refined0.225
r_xyhbond_nbd_refined0.201
r_nbtor_refined0.19
r_nbd_other0.188
r_symmetry_vdw_other0.161
r_mcbond_other0.161
r_chiral_restr0.122
r_symmetry_hbond_refined0.114
r_xyhbond_nbd_other0.096
r_nbtor_other0.087
r_bond_refined_d0.013
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15182
Nucleic Acid Atoms
Solvent Atoms129
Heterogen Atoms486

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction