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Crystal structure of a duf692 family protein (hs_1138) from haemophilus somnus 129pt at 2.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.33 293 NANODROP, 7.5% PEG 8000, 34.0% 2-methyl-2,4-pentanediol, 0.1M Sodium cacodylate pH 6.33, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.37 48.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.572 α = 90 b = 65.992 β = 90 c = 95.585 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-10-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.91840, 0.97939, 0.97953 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 28.689 99.9 0.11 0.11 4.5 3.6 17792 34.907
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 0.6 0.6 0.7 3.6 1285
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 28.689 17291 883 97.13 0.198 0.195 0.2 0.26 0.2616 RANDOM 32.101
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.26 1.72 -2.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.285 r_dihedral_angle_4_deg 17.812 r_dihedral_angle_3_deg 15.662 r_dihedral_angle_1_deg 6.471 r_scangle_it 3.109 r_scbond_it 2.143 r_angle_refined_deg 1.707 r_mcangle_it 1.45 r_angle_other_deg 1.01 r_mcbond_it 0.818
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.285 r_dihedral_angle_4_deg 17.812 r_dihedral_angle_3_deg 15.662 r_dihedral_angle_1_deg 6.471 r_scangle_it 3.109 r_scbond_it 2.143 r_angle_refined_deg 1.707 r_mcangle_it 1.45 r_angle_other_deg 1.01 r_mcbond_it 0.818 r_symmetry_vdw_other 0.323 r_metal_ion_refined 0.278 r_nbd_refined 0.2 r_nbd_other 0.187 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.173 r_symmetry_vdw_refined 0.164 r_symmetry_hbond_refined 0.161 r_mcbond_other 0.147 r_chiral_restr 0.094 r_nbtor_other 0.089 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1986 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction