X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1GIQ1GIQ AND 1IJJ
experimental modelPDB 1IJJ1GIQ AND 1IJJ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.527720% PEG1000, 0.1M MES(pH6.5), VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.9658.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.014α = 90
b = 126.344β = 90
c = 147.127γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102006-12-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.0Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.836.6999.42644526445
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.82.999.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1GIQ AND 1IJJ2.8136.692644525053133399.150.227470.22370.29845RANDOM49.656
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.81-0.040.84
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.805
r_dihedral_angle_3_deg22.222
r_dihedral_angle_4_deg20.005
r_dihedral_angle_1_deg8.013
r_scangle_it3.993
r_scbond_it2.48
r_angle_refined_deg2.198
r_mcangle_it1.836
r_mcbond_it1.035
r_nbtor_refined0.337
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.805
r_dihedral_angle_3_deg22.222
r_dihedral_angle_4_deg20.005
r_dihedral_angle_1_deg8.013
r_scangle_it3.993
r_scbond_it2.48
r_angle_refined_deg2.198
r_mcangle_it1.836
r_mcbond_it1.035
r_nbtor_refined0.337
r_nbd_refined0.277
r_symmetry_vdw_refined0.261
r_symmetry_hbond_refined0.242
r_xyhbond_nbd_refined0.217
r_metal_ion_refined0.176
r_chiral_restr0.139
r_bond_refined_d0.023
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6181
Nucleic Acid Atoms
Solvent Atoms79
Heterogen Atoms104

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing