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Crystal structure of antizyme inhibitor, an ornithine decarboxylase homologous protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH UNDER OIL 8 292 0.2M CaCl2, 0.1M Tris-HCl, 6% PEG 6000, 13mM 2,6-Dimethyl-4-heptyl-beta-D-maltoside, pH 8.0, MICROBATCH UNDER OIL, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.7 54.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.769 α = 90 b = 98.389 β = 90 c = 117.331 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Toroidal Zerodur mirror 2006-12-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97900, 0.98000, 0.97600 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 50 100 0.094 0.075 26.7 14.4 68784
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.04 2.11 99.8 0.418 0.398 5.8 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 50 64688 3447 99.9 0.2 0.198 0.241 0.2468 RANDOM 28.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 0.59 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.643 r_dihedral_angle_4_deg 24.352 r_dihedral_angle_3_deg 17.833 r_dihedral_angle_1_deg 10.085 r_scangle_it 6.557 r_scbond_it 4.752 r_mcangle_it 3.172 r_angle_refined_deg 2.53 r_mcbond_it 2.129 r_symmetry_hbond_refined 0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.643 r_dihedral_angle_4_deg 24.352 r_dihedral_angle_3_deg 17.833 r_dihedral_angle_1_deg 10.085 r_scangle_it 6.557 r_scbond_it 4.752 r_mcangle_it 3.172 r_angle_refined_deg 2.53 r_mcbond_it 2.129 r_symmetry_hbond_refined 0.45 r_nbtor_refined 0.318 r_nbd_refined 0.231 r_chiral_restr 0.215 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.163 r_bond_refined_d 0.035 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6091 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms
Software Software Software Name Purpose SOLVE phasing REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling