3BRQ

Crystal structure of the Escherichia coli transcriptional repressor ascG


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52950.2M Ammonium sulfate, 0.1M Bis-Tris pH 5.5, 30% PEG MME 2000, 2% Sucrose, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.0239.16

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.229α = 90
b = 65.446β = 90
c = 130.706γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315Mirrors2006-12-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97935APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125096.20.09637.676655063778
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.07780.3046.65.55357

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT245.083546235462176096.90.188750.188750.18560.24912RANDOM32.396
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.120.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.56
r_dihedral_angle_4_deg19.924
r_dihedral_angle_3_deg16.863
r_dihedral_angle_1_deg6.032
r_scangle_it4.762
r_scbond_it3.021
r_mcangle_it1.806
r_angle_refined_deg1.654
r_mcbond_it1.013
r_nbtor_refined0.311
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.56
r_dihedral_angle_4_deg19.924
r_dihedral_angle_3_deg16.863
r_dihedral_angle_1_deg6.032
r_scangle_it4.762
r_scbond_it3.021
r_mcangle_it1.806
r_angle_refined_deg1.654
r_mcbond_it1.013
r_nbtor_refined0.311
r_nbd_refined0.224
r_xyhbond_nbd_refined0.192
r_symmetry_hbond_refined0.173
r_symmetry_vdw_refined0.152
r_chiral_restr0.112
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4232
Nucleic Acid Atoms
Solvent Atoms351
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
HKL-2000data reduction
HKL-2000data scaling
HKL-3000phasing