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Crystal Structure of apo-LC8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 Potassium tartrate 0.2M, sodium citrate 0.1M, ammonium sulfate 2.0M, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.84 56.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.972 α = 90 b = 44.972 β = 90 c = 202.11 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2007-02-11 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 100 96.6 0.058 31.8 13961
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 87 0.363 1205
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 38.95 13891 1394 96.68 0.182 0.179 0.178 0.212 0.2103 RANDOM 35.315
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.52 0.76 1.52 -2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.21 r_dihedral_angle_3_deg 12.81 r_scangle_it 11.647 r_scbond_it 7.539 r_dihedral_angle_1_deg 6.595 r_dihedral_angle_4_deg 5.779 r_mcbond_it 4.93 r_mcangle_it 4.917 r_angle_refined_deg 1.301 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.21 r_dihedral_angle_3_deg 12.81 r_scangle_it 11.647 r_scbond_it 7.539 r_dihedral_angle_1_deg 6.595 r_dihedral_angle_4_deg 5.779 r_mcbond_it 4.93 r_mcangle_it 4.917 r_angle_refined_deg 1.301 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.211 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.107 r_symmetry_hbond_refined 0.105 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 761 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 9
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction