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Violacein biosynthetic enzyme VioE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 25% (v/v) PEG-400, 20% (w/v) PEG-3350, 0.1 M magnesium chloride, 0.1 M Tris pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.19 43.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.527 α = 90 b = 82.477 β = 90 c = 90.633 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 141.6 CCD ADSC QUANTUM 315 2007-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9795 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.21 50 90.6 0.066 35.7 13.9 111465 111465
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.21 1.25 54.3 0.258 3.4 3.2 6598
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.21 45.31 105792 5605 90.59 0.16912 0.16781 0.1734 0.19459 0.2002 RANDOM 12.818
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.19 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.465 r_dihedral_angle_4_deg 15.689 r_dihedral_angle_3_deg 11.194 r_dihedral_angle_1_deg 5.86 r_sphericity_bonded 2.654 r_sphericity_free 2.541 r_scangle_it 2.394 r_scbond_it 1.827 r_rigid_bond_restr 1.728 r_mcangle_it 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.465 r_dihedral_angle_4_deg 15.689 r_dihedral_angle_3_deg 11.194 r_dihedral_angle_1_deg 5.86 r_sphericity_bonded 2.654 r_sphericity_free 2.541 r_scangle_it 2.394 r_scbond_it 1.827 r_rigid_bond_restr 1.728 r_mcangle_it 1.35 r_angle_refined_deg 1.209 r_mcbond_it 1.157 r_angle_other_deg 0.816 r_mcbond_other 0.403 r_symmetry_vdw_other 0.272 r_nbd_other 0.196 r_nbd_refined 0.18 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.106 r_symmetry_hbond_refined 0.088 r_nbtor_other 0.08 r_chiral_restr 0.077 r_symmetry_vdw_refined 0.035 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2984 Nucleic Acid Atoms Solvent Atoms 605 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling SHARP phasing