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Crystal structure of a protein with unknown function (arth_0117) from arthrobacter sp. fb24 at 2.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.8 293 NANODROP, 1.86M Ammonium sulfate, 0.2M Lithium sulfate, 0.1M CAPS pH 10.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.99 38.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.373 α = 90 b = 56.127 β = 90 c = 106.335 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-11-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97966 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.975 100 0.089 0.089 7 3.4 11329 24.92
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 0.417 0.417 1.8 3.5 799
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 29.975 11284 1104 99.9 0.19 0.184 0.1877 0.248 0.2441 RANDOM 25.782
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 2.24 -3.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.221 r_dihedral_angle_4_deg 19.477 r_dihedral_angle_3_deg 14.978 r_dihedral_angle_1_deg 5.69 r_scangle_it 5.629 r_scbond_it 4.217 r_mcangle_it 2.473 r_mcbond_it 1.518 r_angle_refined_deg 1.158 r_angle_other_deg 0.849
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.221 r_dihedral_angle_4_deg 19.477 r_dihedral_angle_3_deg 14.978 r_dihedral_angle_1_deg 5.69 r_scangle_it 5.629 r_scbond_it 4.217 r_mcangle_it 2.473 r_mcbond_it 1.518 r_angle_refined_deg 1.158 r_angle_other_deg 0.849 r_mcbond_other 0.328 r_symmetry_vdw_other 0.209 r_symmetry_vdw_refined 0.198 r_nbd_other 0.194 r_nbd_refined 0.184 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.157 r_nbtor_other 0.087 r_chiral_restr 0.057 r_symmetry_hbond_refined 0.043 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1687 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction