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Crystal structure of predicted CIB-like hydrolase (NP_393672.1) from Thermoplasma acidophilum at 1.45 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 NANODROP, 5.0% PEG 3000, 44.0% PEG 400, 0.1M MES pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.17 43.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.384 α = 90 b = 46.292 β = 90 c = 101.644 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-10-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.94939, 0.97939, 0.97953 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 27.338 99.9 0.087 0.087 3.1 3.5 37089 12.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.49 99.9 0.194 0.194 3.5 2.5 2676
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.45 27.338 37039 1851 99.88 0.164 0.163 0.1721 0.189 0.1974 RANDOM 11.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 -0.64 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.007 r_dihedral_angle_4_deg 12.993 r_dihedral_angle_3_deg 12.771 r_dihedral_angle_1_deg 6.481 r_scangle_it 4.91 r_scbond_it 3.791 r_mcangle_it 2.415 r_mcbond_it 1.847 r_angle_refined_deg 1.622 r_angle_other_deg 0.973
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.007 r_dihedral_angle_4_deg 12.993 r_dihedral_angle_3_deg 12.771 r_dihedral_angle_1_deg 6.481 r_scangle_it 4.91 r_scbond_it 3.791 r_mcangle_it 2.415 r_mcbond_it 1.847 r_angle_refined_deg 1.622 r_angle_other_deg 0.973 r_mcbond_other 0.478 r_symmetry_vdw_other 0.292 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.219 r_nbd_other 0.196 r_nbtor_refined 0.185 r_symmetry_vdw_refined 0.145 r_symmetry_hbond_refined 0.115 r_chiral_restr 0.102 r_nbtor_other 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1596 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction