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Crystal structure of YER067W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 13% PEG6000, 0.2M ammonium chloride, 0.1M sodium acetate, 20% glycerol, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.14 42.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.194 α = 90 b = 41.194 β = 90 c = 184.403 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-11-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F2 0.9642, 0.9790, 0.9794 CHESS F2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 50 92.38 0.04 73.4 12 21987 20312
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.68 58.6 0.109 11.5 3 1560
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.7 19.54 18500 18410 920 99.5 0.198 0.198 0.196 0.2021 0.238 0.2439 RANDOM 8.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.74 r_dihedral_angle_3_deg 12.154 r_dihedral_angle_4_deg 7.249 r_dihedral_angle_1_deg 5.345 r_scangle_it 3.682 r_scbond_it 2.545 r_angle_refined_deg 1.368 r_mcangle_it 1.333 r_mcbond_it 0.971 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.74 r_dihedral_angle_3_deg 12.154 r_dihedral_angle_4_deg 7.249 r_dihedral_angle_1_deg 5.345 r_scangle_it 3.682 r_scbond_it 2.545 r_angle_refined_deg 1.368 r_mcangle_it 1.333 r_mcbond_it 0.971 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.243 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.12 r_xyhbond_nbd_refined 0.109 r_chiral_restr 0.095 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1221 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling SHELXS phasing