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Crystal structure of predicted acetamidase/formamidase (YP_546212.1) from Methylobacillus flagellatus KT at 1.58 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 NANODROP, 1.0M LiCl, 20.0% PEG 6000, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.8 31.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.165 α = 107.82 b = 82.723 β = 105.81 c = 83.576 γ = 95.18
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double crystal Si(111) 2007-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.97960 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 29.814 95.8 0.09 0.09 7.2 1.9 196551 13.67
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.62 94.2 0.459 0.459 1.6 1.9 14334
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.58 29.814 196547 9907 95.77 0.14 0.138 0.1495 0.177 0.1867 RANDOM 13.157
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.25 0.34 0.37 -0.12 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.972 r_dihedral_angle_4_deg 16.083 r_dihedral_angle_3_deg 11.291 r_dihedral_angle_1_deg 6.464 r_scangle_it 5.052 r_scbond_it 4.01 r_mcangle_it 2.296 r_mcbond_it 1.824 r_angle_refined_deg 1.508 r_angle_other_deg 0.929
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.972 r_dihedral_angle_4_deg 16.083 r_dihedral_angle_3_deg 11.291 r_dihedral_angle_1_deg 6.464 r_scangle_it 5.052 r_scbond_it 4.01 r_mcangle_it 2.296 r_mcbond_it 1.824 r_angle_refined_deg 1.508 r_angle_other_deg 0.929 r_mcbond_other 0.736 r_symmetry_vdw_other 0.223 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.211 r_nbd_other 0.204 r_nbtor_refined 0.179 r_metal_ion_refined 0.174 r_xyhbond_nbd_refined 0.145 r_symmetry_hbond_refined 0.145 r_chiral_restr 0.095 r_nbtor_other 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12906 Nucleic Acid Atoms Solvent Atoms 1696 Heterogen Atoms 174
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction