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The crystal structure of cpFtsY from Arabidopsis thaliana
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FTS PDB entry 1FTS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.82 56.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.897 α = 90 b = 84.15 β = 90 c = 99.374 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934000 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30 98.9 0.098 0.098 14 4.6 37226 36935 25.069
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.84 96.2 0.405 0.405 2.9 4.5 5002
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1FTS 1.75 30 35088 1847 98.58 0.226 0.2232 0.2214 0.27944 0.2746 RANDOM 24.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 1.98 -1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.955 r_dihedral_angle_4_deg 16.827 r_dihedral_angle_1_deg 14.468 r_dihedral_angle_3_deg 12.952 r_sphericity_free 6.269 r_scangle_it 4.361 r_sphericity_bonded 3.603 r_scbond_it 3.161 r_rigid_bond_restr 2.256 r_mcangle_it 1.991
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.955 r_dihedral_angle_4_deg 16.827 r_dihedral_angle_1_deg 14.468 r_dihedral_angle_3_deg 12.952 r_sphericity_free 6.269 r_scangle_it 4.361 r_sphericity_bonded 3.603 r_scbond_it 3.161 r_rigid_bond_restr 2.256 r_mcangle_it 1.991 r_mcbond_it 1.484 r_angle_refined_deg 1.44 r_nbtor_refined 0.295 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.2 r_symmetry_vdw_refined 0.176 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.093 r_bond_refined_d 0.017 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2261 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling PHASER phasing