☰ Navigation Tabs
Crystal structure of a cadd-like protein of unknown function (npun_f6505) from nostoc punctiforme pcc 73102 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 0.2M Mg(OAc)2, 20.0% PEG 8000, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.33 47.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.67 α = 90 b = 78.51 β = 112.29 c = 45.58 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-09-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0000, 0.9797, 0.9796 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.736 91.9 0.069 6.85 16846 -3 27.36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.06 66 0.431 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 28.736 16827 851 98.24 0.169 0.167 0.1745 0.225 0.2352 RANDOM 24.038
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.58 1.95 -1.19 1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.608 r_dihedral_angle_3_deg 14.666 r_dihedral_angle_4_deg 14.276 r_scangle_it 7.628 r_dihedral_angle_1_deg 6.143 r_scbond_it 5.972 r_mcangle_it 3.374 r_mcbond_it 2.34 r_angle_refined_deg 1.434 r_angle_other_deg 1.031
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.608 r_dihedral_angle_3_deg 14.666 r_dihedral_angle_4_deg 14.276 r_scangle_it 7.628 r_dihedral_angle_1_deg 6.143 r_scbond_it 5.972 r_mcangle_it 3.374 r_mcbond_it 2.34 r_angle_refined_deg 1.434 r_angle_other_deg 1.031 r_mcbond_other 0.584 r_symmetry_vdw_other 0.215 r_symmetry_hbond_refined 0.209 r_nbd_refined 0.206 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.173 r_nbd_other 0.169 r_symmetry_vdw_refined 0.105 r_chiral_restr 0.085 r_nbtor_other 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1783 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELXD phasing autoSHARP phasing