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CRYSTAL STRUCTURE OF A CADD-LIKE PROTEIN OF UNKNOWN FUNCTION (NPUN_F6505) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.35 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 0.2M Mg(OAc)2, 20.0% PEG 8000, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.93 57.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.15 α = 90 b = 91.15 β = 90 c = 67.1 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-09-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0000, 0.9797, 0.9795 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 27.267 96.9 0.046 12.58 68962 -3 17.08
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 91.5 0.823 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.35 27.267 68952 3484 98.97 0.156 0.155 0.1626 0.174 0.1801 RANDOM 17.133
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.17 0.34 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.535 r_dihedral_angle_4_deg 12.559 r_dihedral_angle_3_deg 12.127 r_sphericity_free 6.638 r_scangle_it 5.842 r_dihedral_angle_1_deg 5.025 r_scbond_it 4.333 r_sphericity_bonded 4.1 r_mcangle_it 2.948 r_mcbond_it 2.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.535 r_dihedral_angle_4_deg 12.559 r_dihedral_angle_3_deg 12.127 r_sphericity_free 6.638 r_scangle_it 5.842 r_dihedral_angle_1_deg 5.025 r_scbond_it 4.333 r_sphericity_bonded 4.1 r_mcangle_it 2.948 r_mcbond_it 2.317 r_rigid_bond_restr 2.202 r_mcbond_other 1.63 r_angle_refined_deg 1.259 r_angle_other_deg 0.945 r_symmetry_vdw_refined 0.564 r_symmetry_vdw_other 0.334 r_nbd_refined 0.247 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.177 r_nbd_other 0.175 r_symmetry_hbond_refined 0.16 r_nbtor_other 0.086 r_chiral_restr 0.076 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1773 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELXD phasing autoSHARP phasing