☰ Navigation Tabs
Structure of human REV7 in complex with a human REV3 fragment in a monoclinic crystal
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 25% PEG 2000 MME, 0.8M sodium formate, 0.1M tris-HCl pH 7.5,, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.84 33.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.87 α = 90 b = 50.009 β = 96.9 c = 107.275 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 97.3 0.055 14.1 3.6 35667 25.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 83.1 0.268 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.9 19.96 33833 1780 100 0.18939 0.18669 0.2011 0.24074 0.248 RANDOM 19.769
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.03 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.522 r_dihedral_angle_4_deg 27.738 r_dihedral_angle_3_deg 15.204 r_dihedral_angle_1_deg 5.976 r_scangle_it 4.445 r_scbond_it 2.742 r_mcangle_it 1.716 r_angle_refined_deg 1.689 r_angle_other_deg 1.115 r_mcbond_it 0.927
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.522 r_dihedral_angle_4_deg 27.738 r_dihedral_angle_3_deg 15.204 r_dihedral_angle_1_deg 5.976 r_scangle_it 4.445 r_scbond_it 2.742 r_mcangle_it 1.716 r_angle_refined_deg 1.689 r_angle_other_deg 1.115 r_mcbond_it 0.927 r_mcbond_other 0.25 r_chiral_restr 0.098 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_gen_planes_other 0.008 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3360 Nucleic Acid Atoms Solvent Atoms 257 Heterogen Atoms
Software Software Software Name Purpose SERGUI data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling