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CcCel6C, a glycoside hydrolase family 6 enzyme, complexed with cellobiose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3A64 PDB ENTRY 3A64
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 30% PEG 8000, 0.1M HEPES-KOH, 0.15M magnesium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.05 40.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.168 α = 77.57 b = 45.395 β = 86.91 c = 49.128 γ = 68.6
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2008-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 23.58 92.9 0.036 29.4 2 100613
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.24 89.4 0.184 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3A64 1.2 23.58 95592 5017 92.62 0.14861 0.14753 0.1497 0.16892 0.1709 RANDOM 15.124
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.792 r_dihedral_angle_4_deg 17.47 r_dihedral_angle_3_deg 11.215 r_dihedral_angle_1_deg 5.624 r_sphericity_bonded 3.62 r_sphericity_free 3.516 r_scangle_it 2.751 r_scbond_it 2.433 r_rigid_bond_restr 2.17 r_mcangle_it 1.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.792 r_dihedral_angle_4_deg 17.47 r_dihedral_angle_3_deg 11.215 r_dihedral_angle_1_deg 5.624 r_sphericity_bonded 3.62 r_sphericity_free 3.516 r_scangle_it 2.751 r_scbond_it 2.433 r_rigid_bond_restr 2.17 r_mcangle_it 1.297 r_angle_refined_deg 1.202 r_mcbond_it 0.858 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.094 r_chiral_restr 0.084 r_symmetry_metal_ion_refined 0.024 r_metal_ion_refined 0.018 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2959 Nucleic Acid Atoms Solvent Atoms 579 Heterogen Atoms 37
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling