3A8L

Crystal structure of photo-activation state of Nitrile Hydratase mutant S113A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROPVAPOR DIFFUSION, HANGING DROP
2VAPOR DIFFUSION, HANGING DROPVAPOR DIFFUSION, HANGING DROP

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.324α = 90
b = 60.104β = 124.96
c = 81.885γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 2102009-01-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.000Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.635099.10.0371856325

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2ahj1.6333.085632553451284899.120.166590.165240.19148RANDOM17.118
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.716
r_dihedral_angle_4_deg19.385
r_dihedral_angle_3_deg10.943
r_dihedral_angle_1_deg10.782
r_scangle_it2.914
r_scbond_it1.885
r_angle_refined_deg1.194
r_mcangle_it1.154
r_mcbond_it0.744
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.716
r_dihedral_angle_4_deg19.385
r_dihedral_angle_3_deg10.943
r_dihedral_angle_1_deg10.782
r_scangle_it2.914
r_scbond_it1.885
r_angle_refined_deg1.194
r_mcangle_it1.154
r_mcbond_it0.744
r_nbtor_refined0.309
r_nbd_refined0.199
r_symmetry_hbond_refined0.167
r_symmetry_vdw_refined0.139
r_xyhbond_nbd_refined0.137
r_chiral_restr0.08
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_metal_ion_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3202
Nucleic Acid Atoms
Solvent Atoms635
Heterogen Atoms1

Software

Software
Software NamePurpose
HKL-2000data collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling