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Peroxiredoxin (C50S) from Aeropyrum pernix K1 (acetate-bound form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1M imidazole-HCl, 1M sodium acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.61 52.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.825 α = 105.99 b = 102.918 β = 105.12 c = 104.143 γ = 92.8
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 200 93.8 0.071 6.7 1.9 214677
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 91.1 0.362 1.4 1.8 20800
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.9 95.78 203394 10674 93.77 0.19762 0.19523 0.1955 0.24302 0.2432 RANDOM 27.014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.01 0.09 -0.08 -0.12 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.236 r_dihedral_angle_4_deg 18.114 r_dihedral_angle_3_deg 16.212 r_dihedral_angle_1_deg 8.538 r_scangle_it 4.473 r_scbond_it 2.935 r_angle_refined_deg 1.751 r_mcangle_it 1.721 r_mcbond_it 1.157 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.236 r_dihedral_angle_4_deg 18.114 r_dihedral_angle_3_deg 16.212 r_dihedral_angle_1_deg 8.538 r_scangle_it 4.473 r_scbond_it 2.935 r_angle_refined_deg 1.751 r_mcangle_it 1.721 r_mcbond_it 1.157 r_nbtor_refined 0.317 r_symmetry_vdw_refined 0.307 r_symmetry_hbond_refined 0.224 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.212 r_chiral_restr 0.128 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19681 Nucleic Acid Atoms Solvent Atoms 1459 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling