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 38RH | pdb_000038rh

Structure of the DAB1 Complex in State A


ELECTRON MICROSCOPY
Sample
DAB1 complex with Zn cofactor in detergent micelle
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details3s blot time, blot force 3
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles164827
Reported Resolution (Å)2.29
Resolution MethodFSC 0.143 CUT-OFF
Other DetailscryoSPARC non-uniform refinement
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)500
Maximum Defocus (nm)1800
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcryoSPARC4.7.0
IMAGE ACQUISITIONSerialEM4.2.19
CTF CORRECTIONcryoSPARC4.7.0
MODEL FITTINGPHENIXdev-6003
MODEL REFINEMENTPHENIXdev-6003
CLASSIFICATIONcryoSPARC4.7.0
RECONSTRUCTIONcryoSPARC4.7.0
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTIONPatch CTF used in cryoSPARC