37ZA | pdb_000037za

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2XWR

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		291	0.05 M ammonium sulfate, 15 %w/v PEG 8000, 0.1 M sodium citrate

Crystal Properties
Matthews coefficient	Solvent content
2.22	44.48

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2022-09-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL19U1	0.97853	SSRF	BL19U1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.11	44.87	99.9	0.113	0.134	0.071	0.997	11	6.7		23331

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.11	2.17			0.83	0.988	0.526

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.11	44.87	23315	1173	99.91	0.205	0.2021	0.2081	0.2633	0.2656	40.347

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.526		3.82	-2.763		-0.903

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.524
r_dihedral_angle_4_deg	17.383
r_dihedral_angle_3_deg	16.077
r_dihedral_angle_1_deg	7.955
r_lrange_it	6.624
r_lrange_other	6.618
r_scangle_it	4.79
r_scangle_other	4.787
r_mcangle_it	3.924
r_mcangle_other	3.919

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.524
r_dihedral_angle_4_deg	17.383
r_dihedral_angle_3_deg	16.077
r_dihedral_angle_1_deg	7.955
r_lrange_it	6.624
r_lrange_other	6.618
r_scangle_it	4.79
r_scangle_other	4.787
r_mcangle_it	3.924
r_mcangle_other	3.919
r_scbond_it	3.236
r_scbond_other	3.235
r_mcbond_it	2.722
r_mcbond_other	2.72
r_angle_refined_deg	1.2
r_angle_other_deg	1.136
r_nbd_other	0.204
r_symmetry_xyhbond_nbd_refined	0.196
r_nbd_refined	0.188
r_symmetry_nbd_other	0.188
r_xyhbond_nbd_refined	0.172
r_nbtor_refined	0.152
r_symmetry_nbd_refined	0.139
r_ncsr_local_group_1	0.109
r_symmetry_nbtor_other	0.075
r_metal_ion_refined	0.065
r_chiral_restr	0.047
r_symmetry_xyhbond_nbd_other	0.046
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3150
Nucleic Acid Atoms
Solvent Atoms	128
Heterogen Atoms	2

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.