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Bacillus subtilis GerAA:GerAB:GerAC, in glyco-diosgenin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Sample Bacillus subtilis GerAA:GerAB:GerAC, in glyco-diosgenin
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details wait time = 10 s
blot time = 6 s
blot force above calibrated 0 = +23
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 259371 Reported Resolution (Å) 2.02 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C5
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type TFS FALCON 4i (4k x 4k) Electron Dose (electrons/Å**2) 50.3
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 700 Maximum Defocus (nm) 2200 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 5.0.6 IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC 5.0.6 INITIAL EULER ASSIGNMENT cryoSPARC 5.0.6 FINAL EULER ASSIGNMENT cryoSPARC 5.0.6 RECONSTRUCTION cryoSPARC 5.0.6 MODEL REFINEMENT PHENIX 2.1 MODEL REFINEMENT Coot 1.3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION