☰ Navigation Tabs
Human TRIM21 PRYSPRY domain in complex with PRLX-93936
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 4.3 M Sodium Chloride
0.1 M Hepes pH8
Crystal Properties Matthews coefficient Solvent content 3.27 62.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.613 α = 90 b = 59.613 β = 90 c = 169.577 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2025-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9537 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 56.24 100 1 17.7 25.9 18781
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 0.722
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 48.81 17765 935 99.95 0.20734 0.20575 0.2153 0.2371 0.2471 RANDOM 46.047
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.67 -1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.805 r_long_range_B_refined 8.133 r_long_range_B_other 8.129 r_dihedral_angle_1_deg 7.682 r_scangle_other 6.109 r_mcangle_other 4.962 r_mcangle_it 4.96 r_dihedral_angle_2_deg 4.189 r_scbond_it 3.989 r_scbond_other 3.987
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.805 r_long_range_B_refined 8.133 r_long_range_B_other 8.129 r_dihedral_angle_1_deg 7.682 r_scangle_other 6.109 r_mcangle_other 4.962 r_mcangle_it 4.96 r_dihedral_angle_2_deg 4.189 r_scbond_it 3.989 r_scbond_other 3.987 r_mcbond_it 3.36 r_mcbond_other 3.36 r_angle_refined_deg 1.466 r_angle_other_deg 0.506 r_chiral_restr 0.064 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1433 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing PDB_EXTRACT data extraction