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Mycobacterium abscessus Phophopantheteinyl transferase PptAb in complex with 2-((3,4-dihydro-2H-pyrrol-5-yl)amino)phenol (compound 2a)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6QWU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 285 0.16 M Ca acetate
0.08 M Na Cacodylate
pH 6.5
14.4 % (w/v) PEG 8K
20 % (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.79 55.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.979 α = 90 b = 81.14 β = 90 c = 55.619 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 6M 2026-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.08 55.62 93.2 0.095 0.099 0.027 0.998 13 12.9 950319
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.08 1.21 1.538 1.623 0.504 0.587 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.08 15.74 73577 3690 60.2 0.1505 0.1492 0.1565 0.1738 0.1744 RANDOM 18.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.0948 -0.334 0.2392
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 14.34 t_omega_torsion 4.74 t_angle_deg 1.34 t_bond_d 0.015 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_sum_occupancies t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1671 Nucleic Acid Atoms Solvent Atoms 413 Heterogen Atoms 42
Software Software Software Name Purpose autoPROC data processing autoPROC data reduction XDS data scaling MOLREP phasing BUSTER refinement Coot model building