☰ Navigation Tabs
Magnaporthe oryzae effector PWT8
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Selenourea soaked crystals
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293.15 2.48 M Ammonium Sulfate, 0.1 M HEPES
Crystal Properties Matthews coefficient Solvent content 2.85 56.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.724 α = 90 b = 51.724 β = 90 c = 102.898 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 9M 2023-08-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9537 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 51.8 99.1 0.047 0.049 1 22 14 65657
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 7.12 0.042 0.997
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 51.78 62319 3308 99.1 0.16511 0.1637 0.1726 0.19239 0.1984 RANDOM 24.039
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 0.83 -1.66
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 14.847 r_long_range_B_other 13.869 r_dihedral_angle_3_deg 12.414 r_dihedral_angle_2_deg 10.243 r_scangle_other 7.697 r_dihedral_angle_1_deg 6.796 r_scbond_it 5.97 r_mcangle_other 5.583 r_mcangle_it 5.58 r_scbond_other 5.469
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 14.847 r_long_range_B_other 13.869 r_dihedral_angle_3_deg 12.414 r_dihedral_angle_2_deg 10.243 r_scangle_other 7.697 r_dihedral_angle_1_deg 6.796 r_scbond_it 5.97 r_mcangle_other 5.583 r_mcangle_it 5.58 r_scbond_other 5.469 r_rigid_bond_restr 4.58 r_mcbond_it 4.094 r_mcbond_other 4.082 r_angle_refined_deg 2.053 r_angle_other_deg 0.734 r_chiral_restr 0.109 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1671 Nucleic Acid Atoms Solvent Atoms 250 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement Aimless data scaling DIALS data reduction PHASER phasing PDB_EXTRACT data extraction