☰ Navigation Tabs
Ternary structure of 14-3-3sigma, interaction cassette phosphopeptide 2, and Fusicoccin-A.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3P1N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 277 the complex was set up for hanging-drop crystallization with precipitation buffer consisting of 0.095 M HEPES (pH 7.1), 27% or 29% (v/v) PEG 400, 0.19 M CaCl2 and 5% (v/v) glycerol.
Crystal Properties Matthews coefficient Solvent content 2.54 51.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.156 α = 90 b = 111.414 β = 90 c = 62.63 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2022-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 45.51 99.7 0.999 21.8 13.4 46207
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.871 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 45.51 43875 2312 99.64 0.13748 0.13503 0.1356 0.18455 0.1843 RANDOM 20.174
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 -0.16 -0.89
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 15.151 r_long_range_B_other 14.275 r_scangle_other 11.563 r_dihedral_angle_3_deg 11.512 r_dihedral_angle_2_deg 8.812 r_mcangle_it 8.803 r_mcangle_other 8.8 r_scbond_it 8.531 r_scbond_other 8.527 r_mcbond_it 6.389
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 15.151 r_long_range_B_other 14.275 r_scangle_other 11.563 r_dihedral_angle_3_deg 11.512 r_dihedral_angle_2_deg 8.812 r_mcangle_it 8.803 r_mcangle_other 8.8 r_scbond_it 8.531 r_scbond_other 8.527 r_mcbond_it 6.389 r_mcbond_other 6.387 r_dihedral_angle_1_deg 5.219 r_rigid_bond_restr 5.183 r_angle_refined_deg 2.177 r_angle_other_deg 0.777 r_chiral_restr 0.112 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1888 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement Aimless data scaling MOLREP phasing DIALS data collection